PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.167440.1
Common NameCsa_1G542450, LOC101220022
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 309aa    MW: 34306.4 Da    PI: 4.5304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.167440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.62e-07190234655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ r RR++i  + +eL el+P        K++ ae+L  A +Y+k Lq
  Cucsa.167440.1 190 TIAARERRRKITVKTQELGELVPGG-----SKMNTAEMLNSAFKYVKFLQ 234
                     56789******************95.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-11184246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.182184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-11187256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.59E-8187238No hitNo description
SMARTSM003532.3E-9190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-5190234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAALTYYSNF YSPDPSPYYH HFHYFSPEFS PDLSYVPPPQ LLNHPAAFDY VDDSLFYPTA  60
DTLLFDDALP FLFSDTYPCF SAPSVDEFLP VSSQFFPFDE FEFHCPKRQR AVFEHSFCCG  120
GGVGDGNVGG GGSGAGAGFF PSPPPPPPPL AEVFSGPWDS RMDNAEMRND CLKSQPSPAP  180
SSHNNLSAQT IAARERRRKI TVKTQELGEL VPGGSKMNTA EMLNSAFKYV KFLQAQVAIL  240
QLKQETEQEG QETENLEILE STMIQEKLYS EEKCLVPKGF IQNLADFPEI QSHPSIFNSI  300
NKILHNSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135746.10.0PREDICTED: transcription factor bHLH52
TrEMBLA0A0A0LY560.0A0A0A0LY56_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.16e-25bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]